Visual Analytics for Interactive Multifunctional Confocal Imaging Applications

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Prof. Dr.-Ing Andreas Kolb
Dr. Christof Rezk-Salama

Institute for Vision and
Graphics (IVG)

kolb@informatik.uni-siegen.de
www.ivg.informatik.uni-siegen.de
phone: 0049 (271) 740 - 33 15

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Prof. Dr.-Ing. Peter Haring Bolívar
Dr. Rainer Bornemann

Institute of High Frequency and
Quantum Electronics

peter.haring@uni-siegen.de
www.hqe.fb12.uni-siegen.de
phone: 0049 (271) 740 - 24 10

 

Project Proposal

Visual Analytics for Interactive Multifunctional Confocal Imaging Applications
 

Applicants' Bibliographical Sketches

 

Product Offers

AHF Analysentechnik AG

  • Laser Beam Splitter 540 DCXR
  • Raman Band-Elimination Filter RU 532 LP
  • NIKON Filter Cube AX für TE300
  • HC-Laser Clean-up MaxDiode 473/10
  • HC-Laser Clean-up MaxLine 532/2

FEMTO Messtechnik GmbH

  • DLPCA-200 Current-Amplifier
  • OE-200-SI-FC Photoreceiver
  • PS-15-2-L Power Supply

Märzhäuser Wetzler GmbH & Co. KG

  • SCAN IM 120x100-1mm Motorized Scanning Stage
  • SCAN IM 120x100-2mm Motorized Scanning Stage
  • Tango3-Desktop-Controller
  • Tango3pci-S-Controller

Nikon

  • Objective Lens CFI Plan Apochromat VC 60X

Omicron

  • Laser Diode Module 473nm
  • LDM Laser Power Supply

PEWA

  • Digital Memory Oscilloscope

Scientific Instruments GmbH

  • SR830 DSP Lock-In Amplifier
  • DS345 Function Generator
  • IEEE-488 UND RS-232 Interface

 

Applicants’ Bibliography

(click on particular entries below)

[BBL06] K. Briviba, R. Bornemann and U. Lemmer. Visualization of astaxanthin localization in HT29 human colon adenocarcinoma cells by combined confocal resonance Raman and fluorescence microspectroscopy. In Molecular Nutrition & Food Research 50 (11), p. 991, 2006.

[BGT03] R. Bornemann, I. Gregor and E. Thiel. Konfokale 3D-Scanning Absorption. Deutsches Patent Nr. DE10231543 bzw. PCT-Anmeldung Nr. WO2004008217, 2003.

[Bor05] R. Bornemann. Dreidimensionale konfokale Absorptionsmessungen zur räumlichen Strukturaufklärung. Dissertation, University of Siegen, 2005.

[BT05] R. Bornemann and E. Thiel. dCAM - Dreidimensionale konfokale Laser-Absorptionsmikroskopie zur räumlichen Strukturaufklärung. In Photonik 1/05, 44, 2005.

[BWR+05] R. Bornemann, B. Walk-Lauffer, M. Raupach and U. Lemmer. Bestimmung der Polymerverteilung in textilbewehrtem Beton mittels konfokaler Raman-Mikroskopie. In Photonik 4/2005, 60, 2005.

[CK07] N. Cuntz and A. Kolb. Fast hierarchical 3D distance transforms on the GPU. In Eurographics 2007 (short paper), pages 93-96, 2007.

[CLK07] N. Cuntz, M. Leidl, A. Kolb, C. Rezk-Salama, and M. Böttinger. GPU-based dynamic flow visualization for climate research applications. In Proc. Simulation and Visualization, pages 371-384, 2007.

[CLRK08] N. Cuntz, M. Lambers, C. Rezk-Salama, and A. Kolb. Interactive Visualisation: A State-of-the-Art Survey, chapter Fundamentals for GPU-based Interactive Visualization. Springer, 2008. accepted for publication.

[CSK07] N. Cuntz, R. Strzodka, and A. Kolb. Real-time particle level sets with application to flow visualization. Technical report, Institute Form Vision and Graphics, University of Siegen, 2007.

[EHK+06] K. Engel, M. Hadwiger, J. Kniss, C. Rezk-Salama, D. Weiskopf. Real-Time Volume Graphics, AK Peters, 2006, ISBN: 1-56881-266-3.

[HRE+00] P. Hastreiter, C. Rezk-Salama, K. Eberhardt, B. Tomandl, T. Ertl. Functional Analysis of the Vertebral Column based on MR and Direct Volume Rendering. In Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI), 2000.

[HRG+98] P. Hastreiter, C. Rezk-Salama, G. Greiner, T. Ertl. Efficient Representation of Cortical Convolutions for the Analysis of Brain Surface Topology. In Bildverarbeitung für die Medizin, Springer, 1998.

[HRG+99] P. Hastreiter, C. Rezk-Salama, G. Greiner, T. Ertl. Interactive Direct Volume Rendering of the Inner Ear for the Planning of Neurosurgery. In Bildverarbeitung für die Medizin, Springer, 1999.

[HRS04] P. Hastreiter, C. Rezk-Salama, G. Soza, G.Greiner, R. Fahlbusch, O. Ganslandt, C. Nimsky. Strategies for Brain Shift Evaluation. In Medical Imaging, 8(4), 2004, pages 447-464.

[HRT+98] P. Hastreiter, C. Rezk-Salama, B. Tomandl, K. Eberhardt, T. Ertl. Fast Analysis of Intracranial Aneurysms based on Interactive Direct Volume Rendering and CT Angiography. In Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI), 1998.

[HWK+95] P. Haring Bolívar, G. Wegmann, R. Kersting, M. Deussen, U. Lemmer, R.F. Mahrt, H. Kurz, H. Bässler and E.O. Göbel. Dynamics of excitation transfer in dye doped pi-conjugated polymers. In Chem. Phys. Letters. 245, 534-538, 1995.

[KCN+01] S. Kyrsta, R. Cremer, D. Neuschütz, M. Laurenzis, P. Haring Bolívar and H. Kurz. Deposition and characterization of Ge-Sb-Te layers for applications in optical data storage. In Appl. Surf. Sc. 179, 55-60, 2001.

[KHK95] V. Klimov, P. Haring Bolívar and H. Kurz. Hot phonon effects in femtosecond luminescence spectra of electron-hole plasma in CdS. In Phys. Rev. B 52 (7), 4728, 1995.

[KOKP07] M. Keller, J. Orthmann, A. Kolb, V. Peters. A Simulation Framework for Time-Of-Flight Sensors. In International Symposium on Signals, Circuits and Systems, Circuits and Systems (ISSCS). Iasi, Rumänien : IEEE CAS Society, pages 125-128, 2007.

[KLR04] A. Kolb, L. Latta, and C. Rezk-Salama. Hardware-based simulation and collision detection for large particle systems. In Proc. Graphics Hardware, pages 123-31, 2004.

[LHB+92] K. Leo, P. Haring Bolívar, F. Brüggemann, R. Schwedler and K. Köhler. Observation of Bloch Oscillations in a semiconductor superlattice. In Solid State Communications, 84 (10), 943, 1992.

[LK06] M. Lindner, A. Kolb. Lateral and depth calibration of PMD-distance sensors. In Proc. Int. Symp. on Visual Computing LNCS 4292, Berlin : Springer, pages 524–533, 2006.

[LKNK07] M. Lambers, A. Kolb, H. Nies, M. Kalkuhl. GPU-based Framework for Interactive Visualization of SAR Data. In Proc. Int. IEEE Geoscience and Remote Sensing Symposium (IGARSS), 2007.

[LK07] M. Lindner, A. Kolb. Calibration of the intensity-related distance error of the PMD-TOF-camera. In Proc. SPIE, Intelligent Robots and Computer Vision 6764OW, 2007.

[LK08a] M. Lambers and A. Kolb. Adaptive dynamic range reduction for SAR images. In Proc. EUSAR, 2008. accepted for publication.

[LK08b] M. Lambers and A. Kolb. Interactive dynamic range reduction for SAR images. Geoscience and Remote Sensing Letters (GRSL), 2008. accepted subject to minor modifications.

[REB+00] C. Rezk-Salama, K. Engel, M. Bauer, G. Greiner, T. Ertl. Interactive Volume Rendering on Standard PC Graphics Hardware Using Multi-Textures and Multi-Stage Rasterization. In Proc. ACM SIGGRAPH/Eurographics Workshop on Graphics Hardware 2000.

[Rez02] C. Rezk-Salama. Volume Rendering Techniques for General Purpose Graphics Hardware. Dissertation, Computer Science Department, Universität Erlangen-Nürnberg, 2002.

[Rez07] C. Rezk-Salama. GPU-Based Monte-Carlo Volume Raycasting. In Proc. Pacific Graphics, 2007.

[RHE+99] C. Rezk-Salama, P. Hastreiter, K. Eberhardt, B. Tomandl, T. Ertl. Interactive Direct Volume Rendering of Dural Arteriovenous Fistulae in MR-CISS Data. In Proc. Medical Image Computing and Computer Assistend Intervention (MICCAI), 1999.

[RHS+00] C. Rezk-Salama, P. Hastreiter, J. Scherer, G. Greiner. Automatic Adjustment of Transfer Functions for 3D Volume Visualization. In Proc. Vision, Modeling and Visualization, 2000.

[RK06] C. Rezk-Salama, A. Kolb. Opacity Peeling for Direct Volume Rendering,. In Computer Graphics Forum (Proc. Eurographics), 25(3), 2006, pages 597-606.

[RKK06] C. Rezk-Salama, M. Keller, and P.Kohlmann. High-Level User Interfaces for Transfer Function Design with Semantics. In IEEE Trans. on Visualization and Computer Graphics (Proc. IEEE Visualization), 11(5), 2006, pages 1021-1028.

[RSS+01] C. Rezk-Salama, M. Scheuering, G. Soza, G. Greiner. Fast Volumetric Deformation on General Purpose Hardware. In Proc. EG/ACM SIGGRAPH Workshop on Graphics Hardware, 2001.

[SDK05] R. Strzodka, M. Doggett, and A. Kolb. Scientific computation for simulations on programmable graphics hardware. In Simulation Modelling Practice and Theory, Special Issue: Programmable Graphics Hardware 13, 2005, Nr. 8. pages 667-680.

[WBK+02] B. Walk-Lauffer, R. Bornemann, D. Knöfel and E. Thiel. In Situ Observation of Hydrating Cement-Clincer-Phases by Means of Confocal Scanning Microscopy - First Results. In 24th International Congress on Cement Microscopy, San Diego (USA), 95-106, 2002.

[WR01] R. Westermann and C. Rezk-Salama. Real-Time Volume Deformation. In Computer Graphics Forum (Proc. Eurographics), 20(3), 2001.